Exploring microbial community structure and their interrelationship in tomato Rhizosphere

  • Sangram Sinha Department of Botany, Vivekananda Mahavidyalaya, Haripal, Hooghly, West Bengal, Pin code-712405, India
Keywords: Bacillus cereus, microbial diversity, Rhizosphere, Signature genus, tomato

Abstract

The Rhizosphere is the small zone surrounding plants' root surface is now considered as hot spot for microbial diversity and pivotal for plant-microbe interaction. The plant-microbe interaction is very vital for plant growth, productivity and stress tolerance. The present study attempted to explore the culturable microbial diversity in the tomato Rhizosphere from agricultural fields of Haripal block of West Bengal. The study found that the Rhizosphere is rich in gram-positive rods, and further biochemical characterisation predicted Bacillus cereus as the signature genus consisting of 26% of the total bacteria characterised in this study. Pearson’s correlation coefficient of different important adaptive characters of the bacterial population revealed strong correlations between salt tolerance, exo-polysaccharide (EPS) production, acid tolerance and phosphate solubilizing activity. These interactions may be crucial for Rhizosphere colonisation and overcoming hostile environment like salinity, drought, soil acidity and ultimately promote plant growth under diverse environmental stress.

References

Ahemad, M. and Khan, M. S. (2012) Evaluation of plant-growth-promoting activities of rhizobacter-ium, Pseudomonas putida under herbicide stress. Annals of Microbiology. 62: 1531–1540.

Aktar, M. W., Sengupta, D. and Chowdhury, A. (2009). Impact of pesticides use in agriculture: their benefits and hazards. Interdiscipl. Toxicology. 2(1): 1–12.

Chen, J. H. (2006). The combined use of chemical and organic fertilizers and/or biofertilizer for crop growth and soil fertility. Proceedings of International Workshop on Sustained Management of the Soil-Rhizosphere System for Efficient Crop Production and Fertilizer Use. Bangkok. Pp. 1-11.

Garbeva, P., van Veen, J. A. and van Elsas, J. D. 2003. Predominant Bacillusspp. in agricultural soil under different management regimes detected via PCR-DGGE. Microbial Ecology. 45 (3): 302-316.

Glick, B. R. (2012). Plant Growth-Promoting Bacteria: Mechanisms and Applications. Scientifica. PMID: 24278762.

Hazra, F. and Pratiwi, E. (2013). Isolation, Characterization, and Molecular Identification of Phosphate Solubilizing Bacteria from Several Tropical Soils. Journal of Tropical Soils. 18(1): 67.

Holt, J. G., Krieg, N. R., Sneath, P. H. A. and Williams, S. T. (1994). Bergey’s Manual od Determinative Bacteriology, 9th ed. Baltimore, Md: Williams & Wilkins.

Kloepper, J. W., Lifshitz, R. and Zablotowicz, R. M. (1989). Free-living bacteria linocula for enhancing crop productivity. Trends.Biotech. 7: 39–43.

Lee, S. A., Park, J., Chu, B., Kim, J. M., Joa, J. H., Sang, M. K., Weon, H. Y. (2016). Comparative analysis of bacterial diversity in the rhizosphere of tomato by culture-dependent and -independent approaches. Journal of Microbiology. 54(12): 823–831.

Marvasi, M., Visscher, P. T. and Casillas, M. L. (2010). Exopolymeric substances (EPS) from Bacillus subtilis: polymers and genes encoding their synthesis. FEMS Microbiology Letters. 313(1): 1–9.

Mu’minah, B., Subair, H. and Fahruddin. (2015). Isolation and Screening Bacterial Exopolysaccharide (EPS) from Potato Rhizosphere in Highland and the Potential as a Producer Indole Acetic Acid (IAA). Procedia Food Science. 3: 74–81.

Narendra, B. A., Jogaiah, S., Ito, S., Kestur, N. A. and Tran, L. S. (2015). Improvement of growth, fruit weight and early blight disease protection of tomato plants by rhizosphere bacteria is correlated with their beneficial traits and induced biosynthesis of antioxidant peroxidase and polyphenol oxidase. Plant Science: an International Journal of Experimental Plant Biology. 231: 62–73.

Sandhya, V. and Ali, S. Z. (2015). The production of exo-polysaccharide by Pseudomonas putida GAP-P45 under various abiotic stress conditions and its role in soil aggregation. Microbiol.. 84: 512–519.

Sarkar, B. (2017). Traditional use of medicinal plants and its biodiversity in India. International Journal of Experimental Research and Review. 10: 23-26.

Sayyed, R. Z., Patel, P. R. and Shaikh, S. S. (2015). Plant growth promotion and root colonization by EPS producing Enterobacter sp. RZS5 under heavy metal contaminated soil. Indian Journal of Experimental Biology. 53(2): 116-23.

Sinha, S. and Mukherjee, S. K. (2008). Cadmium-induced sideropho repro-duction by a high Cd-resistant bacterial strain relieved Cd toxicity inplants through root colonization. Current Microbiology 56(1): 55-60.

Smith, D. L., Praslickova, D. and Ilangumaran, G. (2015). Inter-organismal signalling and management of the phytomicrobiome. Frontier in Plant Science. 6: 722.

Torsvik, V., Ovreas, L. and Thingstad, T. F. (2002). Prokaryotic diversity: Magnitude, dynamics, and controlling factors. Science. 296: 1064‒1066.

Vacheron, J., Desbrosses, G., Bouffaud, M. L., Touraine, B., Moënne-Loccoz, Y., Muller, D., Legendre, L., Wisniewski-Dyé, F. and Prigent-Combaret, C. (2013). Plant growth-promoting rhizobacteria and root system functioning. Frontiers in Plant Science. 4 (356): 1-19.

Vessey, J. K. (2003). Plant growth promoting rhizobacteria as biofertilizers. Plant Soil. 255: 571–586.

Published
2017-08-30
How to Cite
Sinha, S. (2017). Exploring microbial community structure and their interrelationship in tomato Rhizosphere. International Journal of Experimental Research and Review, 12, 50-57. https://doi.org/10.52756/ijerr.2017.v12.007
Section
Articles